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Proyecto ADN Puertorriqueño - Haplogroup E3a, E3b, B


Proyecto ADN de Apellidos Puertorriqueños  
   
(The Puerto Rican DNA Geographic Project)

Administrator: Padre José Antonio Oquendo Pabón, STL
 Co Administrator:
Dra. Ana Oquendo Pabón, MD
 

   

yDNA12 - ADNy12



updated 10-16-2005
(Remember to reload the page each visit for the latest update)

Welcome to our DNA Project Haplogroup page.

The data presented here is for our 13 Haplogroup E3a, E3b and B members.
As can be seen below, four members are in Haplogroup E3a. Two of these  are without Haplogroup assignments but from their haplotype comparisons, are probable E3a members. Eight participants are estimated to belong to Haplogroup E3b (2 of these have been SNP tested and are M35+). Our newest member is from the Genographic Project.  There is only one member who is in Haplogroup B. He has been SNP tested M+60.

ID 26160 and 27738 are an exact match at 12/12 and 25/25 markers. Upon further upgrade, they match on 36/37 markers. They were estimated to be E3b. Neither duo share the same surname. However, after further communication between the two individuals, it was discovered that one is adopted and his biological father did share the same surname as that of the other individual.

ID 13980 and ID 25891 are an exact match but do not share the same paternal surname. Upgrade to 25 markers is recommended and contemplated.

ID N7369 is a one step match to both ID 25891 and ID 14093. It is recommended that they upgrade to 25 markers to further define their relationships.
 
The genetic distance among the Haplogroup E3b group is from 0-8.
The genetic distance among the Haplogroup E3a group is 3-8.
The genetic distance from the one Haplogroup B member to the rest is 7-8.

Haplogroup E3a  Haplogroup E3a is an African lineage.
Its signature is DYS19/394=15, DYS390=21, DYS391=10, DYS392=11, DYS393=13.
It is currently hypothesized that this haplogroup dispersed south from northern Africa within the last 3,000 years, by the Bantu agricultural expansion. The Bantus are the most likely origin of the spread of culture and language througout the central, western and southern African continent. Haplogroup E3a is also the most common lineage among African Americans.


As the African slave trade was an integral part of the Spain, Africa and Caribbean Atlantic triangle of sugar, slaves and tobacco, this Haplogroup most likely arrived on the island with the involuntary import of African slaves. Shortly after the colonization of Puerto Rico, the bearers of this Haplogroup replaced the enslaved Taíno laborers whose population had diminished considerably under the encomienda system in the gold mines and sugar mills due to disease, torture and mistreatment.

One of the outposts for slave ships, the Cape Verde Islands Archipelago was
the site where many of our ancestral E3a and mitochondrial DNA L Haplogroup individuals may have once briefly sojourned before being brought to the West Indies. Incidentally, the coconut tree was introduced from the Cape Verde Islands in 1542.



Also See: Mitochondrial portrait of the Cabo Verde archipelago: the Senegambian outpost of Atlantic slave trade A.  BREHM, L.  PEREIRA, H.-J.  BANDELT, M. J.  PRATA   and A.  AMORIM. 

You can read more about Haplogroup E3a, E3b, R1b and the other Haplogroups on Dr. Dennis Garvey's Y Chromosome Haplogroup excellent webpage.



Bantu expansion
Enlarge
Bantu expansion   The origins and spread of the Bantu languages.

Credit: Created by Mark Dingemanse 23 september 2004, released under CC-by-2.0


To definitively ascertain whether an individual is truly in a specific haplogroup, they should be SNP tested. One of the most notable SNPs (Single Nucleotide Polymorphism) in Haplogroup E3a is M191 as discovered by Jobling et al.

Haplogroup E3b  This haplogroup is believed to have evolved in the Middle East. It expanded into the Mediterranean during the Pleistocene Neolithic expansion and brought farming to Europe around 9,000 yrs. ago. It is currently distributed around the Mediterranean, southern Europe, and in north and east Africa. 

Note: It is probable that the E3b Haplogroup signature most likely arrived on the island of Puerto Rico from the early period after the colonization and later in immigrants who had Moorish, Berber or other North African admixture who had left their signature in Iberia during the 700 year reign under Moorish rule. The Moorish domination ended in 1492 under Ferdinand and Isabel. The ancient Phoenicians also belonged to Haplogroup E3b. The most common E3b subclade in Iberia is E3b1 beta cluster and has the following sequence as discussed in the study by Cruciani et al:

DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
13 14 30 24 9
11
13
11 14



Haplogroup B is one of the oldest Y-chromosome lineages in humans. Haplogroup B is found exclusively in Africa. This lineage was the first to disperse around Africa. There is current archaeological evidence supporting a major population expansion in Africa approximately 90-130 thousand years ago. It has been proposed that this event may have spread Haplogroup B throughout Africa. Haplogroup B appears at low frequency all around Africa, but is at its highest frequency in Pygmy populations. (FTDNA)



The updated 2005 Y Cromosome Phylogenetic Tree Map showing the SNPs for all the Y Haplogroups may be found here.


Haplogroup E3a and E3b   yDNA 12 Marker Results

DYS19 is also known as DYS394. The loci highlighted in red are known to be

fast mutating sites.

Ysearch Database Configuration - DNA Results Comparison



ID
D
Y
S
3
9
3
D
Y
S
3
9
0
D
Y
S
1
9
/
3
9
4
D
Y
S
3
9
1
D
Y
S
3
8
5
a
D
Y
S
3
8
5
b
D
Y
S
4
2
6
D
Y
S
3
8
8
D
Y
S
4
3
9
D
Y
S
3
8
9
-
1
D
Y
S
3
9
2
D
Y
S
3
8
9
-
2
modal 13241391314111210141130
30838E3a 132115101616111211131132
10167E3a 132115111617111211131131
15254E3a 132116111618111411141130
24974E3a 142115101718111210131131
13980E3b 13241391314111210141130
25891E3b 13241391314111210141130
26160E3b 13241391314111210151131
27738E3b 13241391314111210151131
N7531E3b 13241391315111210141130
14093E3b 13241391315111210141130
N7369E3b 13241391414111210141130
14124E3b 132413101518111212131130
36097__B 132415101112111013141132
Distance from reference: Zero One Two Three+


SMGF Database Configuration - DNA Results Comparison



ID
D
Y
S
3
8
5
D
Y
S
3
8
8
D
Y
S
3
8
9
I
D
Y
S
3
8
9
I
I
D
Y
S
3
9
0
D
Y
S
3
9
1
D
Y
S
3
9
2
D
Y
S
3
9
3
D
Y
S
3
9
4
/
1
9
D
Y
S
4
2
6
D
Y
S
4
3
9
modal 13-141214302491113141110
30838E3a 16-1612133221101113161111
10167E3a 16-1712133121111113161111
15254E3a 16-1814143021111113171111
24974E3a 17-1812133121101114161110
13980E3b 13-141214302491113141110
25891E3b 13-141214302491113141110
26160E3b 13-141215312491113141110
27738E3b 13-141215312491113141110
N7531E3b 13-151214302491113141110
14093E3b 13-151214302491113141110
N7369E3b 14-141214302491113141110
14124E3b 15-1812133024101113141112
36097__B 11-1210143224101113161113
Distance from reference: Zero One Two Three+

Ybase Database Configuration - DNA Results Comparison



ID
D
Y
S
1
9
/
3
9
4
D
Y
S
3
8
5
a
D
Y
S
3
8
5
b
D
Y
S
3
8
8
D
Y
S
3
8
9
i
D
Y
S
3
8
9
i
i
D
Y
S
3
9
0
D
Y
S
3
9
1
D
Y
S
3
9
2
D
Y
S
3
9
3
D
Y
S
4
2
6
D
Y
S
4
3
9
modal 13131412143024911131110
30838E3a 151616121332211011131111
10167E3a 151617121331211111131111
15254E3a 161618141430211111131111
24974E3a 151718121331211011141110
13980E3b 13131412143024911131110
25891E3b 13131412143024911131110
26160E3b 13131412153124911131110
27738E3b 13131412153124911131110
N7531E3b 13131512143024911131110
14093E3b 13131512143024911131110
N7369E3b 13141412143024911131110
14124E3b 131518121330241011131112
36097__B 151112101432241011131113
Distance from reference: Zero One Two Three+

Yhrd - DNA Comparison


ID
D
Y
S
1
9
D
Y
S
3
8
9

I
D
Y
S
3
8
9

I
I
D
Y
S
3
9
0
D
Y
S
3
9
1
D
Y
S
3
9
2
D
Y
S
3
9
3
D
Y
S
3
8
5
D
Y
S
4
3
9
modal 131430249111313.1410
30838E3a 1513322110111316.1611
10167E3a 1513312111111316.1711
15254E3a 1614302111111316.1811
24974E3a 1513312110111417.1810
13980E3b 131430249111313.1410
25891E3b 131430249111313.1410
26160E3b 131531249111313.1410
27738E3b 131531249111313.1410
N7531E3b 131430249111313.1510
14093E3b 131430249111313.1510
N7369E3b 131430249111314.1410
14124E3b 1313302410111315.1812
36097__B 1514322410111311.1213
Distance from reference: Zero One Two Three+

Genetic Distance



ID
m
o
d
a
l
3
0
8
3
8
E
3
a

1
0
1
6
7
E
3
a
1
5
2
5
4
E
3
a
2
4
9
7
4
E
3
a
1
3
9
8
0
E
3
b
2
5
8
9
1
E
3
b
2
6
1
6
0
E
3
b
2
7
7
3
8
E
3
b
N
7
5
3
1
E
3
b
1
4
0
9
3
E
3
b
N
7
3
6
9
E
3
b
1
4
1
2
4
E
3
b
3
6
0
9
7
_
_
B
modal 128878001111167
30838E3a 812365888888867
10167E3a 831255888888877
15254E3a 765128778877788
24974E3a 855812888888867
13980E3b 088781201111167
25891E3b 088780121111167
26160E3b 188881112022268
27738E3b 188881101222268
N7531E3b 188781122120267
14093E3b 188781122012267
N7369E3b 188781122221267
14124E3b 667866666666127
36097__B 777877788777712
Related Probably Related Possibly Related
FTDNA's Interpreting Genetic Distance for 12 Markers
FTDNA's Interpreting Genetic Distance for 25 Markers
FTDNA's Interpreting Genetic Distance for 37 Markers
- Infinite allele mutation model is used
- Values on the diagonal indicate number of markers tested

Time to Most Recent Common Ancestor (Years)



ID
m
o
d
a
l
3
0
8
3
8
E
3
a
1
0
1
6
7
E
3
a
1
5
2
5
4
E
3
a
2
4
9
7
4
E
3
a
1
3
9
8
0
E
3
b
2
5
8
9
1
E
3
b
2
6
1
6
0
E
3
b
2
7
7
3
8
E
3
b
N
7
5
3
1
E
3
b
1
4
0
9
3
E
3
b
N
7
3
6
9
E
3
b
1
4
1
2
4
E
3
b
3
6
0
9
7
_
_
B
modal 12377537753025377517517545045045045045024253025
30838E3a  377512110024251925377537753775377537753775377524253025
10167E3a 377511001219251925377537753775377537753775377530253025
15254E3a 302524251925123775302530253775377530253025302537753775
24974E3a 377519251925377512377537753775377537753775377524253025
13980E3b 17537753775302537751217545045045045045024253025
25891E3b 17537753775302537751751245045045045045024253025
26160E3b 45037753775377537754504501217577577577524253775
27738E3b 45037753775377537754504501751277577577524253775
N7531E3b 45037753775302537754504507757751217577524253025
14093E3b 45037753775302537754504507757751751277524253025
N7369E3b 45037753775302537754504507757757757751224253025
14124E3b 242524253025377524252425242524252425242524252425123025
36097__B 302530253025377530253025302537753775302530253025302512
0-225 Years 250-475 Years 500-725 Years 750-975 Years
- Infinite allele mutation model is used
- Average mutation rate varies: 0.0040 to 0.0040, from FTDNA derived rates
- Values on the diagonal indicate number of markers tested
- Probability is 50% that the TMRCA is no longer than indicated
- Average generaton: 25 years


DNA Analysis Charts 
courtesy of 

  
                                             
                            Haplogroup  E3a, E3b and B   Phylogenetic   Diagrams               

     
 
Median Joining Phylogenetic Diagram produced courtesy of Network software from Fluxus Technology as described by Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48

Modal
13241391314111210131130






                                                                                                                     

  Median Joining Phylogenetic Diagram produced courtesy of Network software from Fluxus Technology as described by Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48

Modal
13241391314111210131130




October 2005





 
B, E3a, E3b Haplotree



Radiating Network Tree






Programs used:

yDNA Haplogroup Predictor by Whit Athey
yDNA utility Tools by Dean McGee
Phylip3.65 Phylogenetic Tree Network Software
MEGA3.1 Network Tree Phlyogenetic Software
Fluxus Network vers. 4.111 by Flux Engineering
FTDNA ToolTip vers.1.1 DNA Time Predictor

Dean McGee's yDNA Utility                            Phylip Settings

  • Probability - 95%                                  Kitch with L, J option                        
          Mutation Rate (FTDNA)- .004           Random Seeds: 9;  99 Jumbles

References
Bandelt H-J, Forster P, R÷hl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48

S Kumar, K Tamura, and M Nei (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5:150-163.

  About DNAPrint (click)

            


Group Comparison Chart Results  

yDNA12 Chart Results   yDNA25 Chart Results   yDNA37 Chart Results


  Phylogenetic Diagrams 2004
 

           yDNA12                       yDNA25                      yDNA 37 


                 Project mtDNA Haplogroups

     
   


                  About DNA Testing - Hispanic Projects



                          Affiliate                              
(All small commission monies received through this affiliation is directly placed in a fund for small scholarships for participants. The  administrators receive no monies whatsoever)

Copyright © 2003-2005 Dra. Ana y Padre José Antonio Oquendo Pabón, STL, Administrators,
  Proyecto ADN de Apellidos Puertorriqueños (The Puerto Rican DNA Geographic Project).
  Todos los Derechos Reservados. All Rights Reserved.
 


 


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